Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs209525 chr6:53215440 G/A 6.72E-5 508 13.7 22.87 22.47 KM Plot
LGG rs209526 chr6:53215899 A/C 6.72E-5 508 13.7 22.87 22.47 KM Plot
LGG rs209527 chr6:53216426 G/A 6.72E-5 508 13.7 22.87 22.47 KM Plot
LGG rs209528 chr6:53216803 A/C 6.72E-5 508 13.7 22.87 22.47 KM Plot
LGG rs209530 chr6:53221076 C/T 8.6E-6 499 11.88 24.53 22.37 KM Plot
LGG rs209531 chr6:53221279 T/C 1.09E-5 497 11.88 24.53 22.37 KM Plot
LGG rs2120485 chr8:6180270 T/G 1.77E-5 507 22.47 23.8 7.72 KM Plot
LGG rs2163013 chr6:53110301 A/G 1.69E-5 508 22.47 22.87 14.8 KM Plot
LGG rs2184357 chr10:116080170 T/C 7.34E-5 505 17.93 23.95 22.78 KM Plot
LGG rs2233531 chr16:10837913 C/G 1.38E-5 499 23.53 21.28 8.17 KM Plot
LGG rs2233537 chr16:10849726 A/G 1.99E-5 509 8.17 23.5 21.87 KM Plot
LGG rs2276532 chr21:45485588 A/T 1.35E-6 503 21.85 24.67 0.77 KM Plot
LGG rs2294853 chr6:53158052 G/A 2.4E-5 509 22.58 22.23 14.8 KM Plot
LGG rs2294857 chr6:53159090 G/T 2.4E-5 509 22.58 22.23 14.8 KM Plot
LGG rs2294858 chr6:53159399 T/C 2.4E-5 509 22.58 22.23 14.8 KM Plot